IL_7TOR_138

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_138 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2556

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7TOR|1|A28S|C|1431
7TOR|1|A28S|G|1432
7TOR|1|A28S|A|1433
7TOR|1|A28S|G|1434
*
7TOR|1|A28S|C|1450
7TOR|1|A28S|G|1451
7TOR|1|A28S|A|1452
7TOR|1|A28S|G|1453

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

eL18