IL_7TOR_205

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

7TOR|1|A28S|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_205 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.0986

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7TOR|1|A28S|G|3913
7TOR|1|A28S|U|3914
7TOR|1|A28S|U|3915
*
7TOR|1|A28S|A|4388
7TOR|1|A28S|C|4389

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL28

60S ribosomal protein L27a

Chain GR1

GR20, ALS/FTD dipeptide repeat protein