IL_7TOR_209

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGUAGAAUAAG*CUACU

Length

19 nucleotides

Bulged bases

7TOR|1|A28S|U|3957, 7TOR|1|A28S|G|3958, 7TOR|1|A28S|U|3964, 7TOR|1|A28S|A|3965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|A|3954
7TOR|1|A28S|G|3955
7TOR|1|A28S|G|3956
7TOR|1|A28S|U|3957
7TOR|1|A28S|G|3958
7TOR|1|A28S|U|3959
7TOR|1|A28S|A|3960
7TOR|1|A28S|G|3961
7TOR|1|A28S|A|3962
7TOR|1|A28S|A|3963
7TOR|1|A28S|U|3964
7TOR|1|A28S|A|3965
7TOR|1|A28S|A|3966
7TOR|1|A28S|G|3967
*
7TOR|1|A28S|C|4054
7TOR|1|A28S|U|4055
7TOR|1|A28S|A|4056
7TOR|1|A28S|C|4057
7TOR|1|A28S|U|4058

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA