3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GG*UCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_218 not in the Motif Atlas
Geometric match to IL_5TBW_102
Geometric discrepancy: 0.1191
The information below is about IL_5TBW_102
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

7TOR|1|A28S|G|4400
7TOR|1|A28S|G|4401
*
7TOR|1|A28S|U|4442
7TOR|1|A28S|C|4443
7TOR|1|A28S|C|4444

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL03
60S ribosomal protein L3
Chain AL10
Ribosomal protein L10
Chain AL29
eL29

Coloring options:


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