IL_7TOR_222

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_222 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1572

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7TOR|1|A28S|C|4412
7TOR|1|A28S|C|4413
7TOR|1|A28S|A|4414
7TOR|1|A28S|A|4415
7TOR|1|A28S|G|4416
*
7TOR|1|A28S|C|4426
7TOR|1|A28S|G|4427
7TOR|1|A28S|A|4428
7TOR|1|A28S|C|4429
7TOR|1|A28S|G|4430

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL40

eL40