IL_7TOR_231

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7TOR|1|A28S|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_231 not in the Motif Atlas

Geometric match to IL_7A0S_081

Geometric discrepancy: 0.3126

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7TOR|1|A28S|C|4582
7TOR|1|A28S|C|4583
7TOR|1|A28S|A|4584
7TOR|1|A28S|U|4585
*
7TOR|1|A28S|A|4717
7TOR|1|A28S|G|4718
7TOR|1|A28S|G|4719
7TOR|1|A28S|C|4720
7TOR|1|A28S|G|4721

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

uL13