IL_7TOR_240

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

7TOR|1|A28S|C|4757, 7TOR|1|A28S|U|4758, 7TOR|1|A28S|A|4764, 7TOR|1|A28S|G|4870, 7TOR|1|A28S|G|4873, 7TOR|1|A28S|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|4756
7TOR|1|A28S|C|4757
7TOR|1|A28S|U|4758
7TOR|1|A28S|C|4759
7TOR|1|A28S|G|4760
7TOR|1|A28S|G|4761
7TOR|1|A28S|A|4762
7TOR|1|A28S|U|4763
7TOR|1|A28S|A|4764
7TOR|1|A28S|G|4765
7TOR|1|A28S|C|4766
*
7TOR|1|A28S|G|4868
7TOR|1|A28S|U|4869
7TOR|1|A28S|G|4870
7TOR|1|A28S|C|4871
7TOR|1|A28S|G|4872
7TOR|1|A28S|G|4873
7TOR|1|A28S|A|4874
7TOR|1|A28S|G|4875
7TOR|1|A28S|A|4876
7TOR|1|A28S|G|4877

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL09

60S ribosomal protein L9

Chain AL14

60S ribosomal protein L14

Chain AL16

uL13

Chain AL20

eL20