IL_7TQL_011

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_011 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1574

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7TQL|1|2|U|116
7TQL|1|2|C|117
7TQL|1|2|C|118
7TQL|1|2|U|119
7TQL|1|2|U|120
7TQL|1|2|U|121
*
7TQL|1|2|A|343
7TQL|1|2|U|344
7TQL|1|2|U|345
7TQL|1|2|C|346
7TQL|1|2|G|347

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8