IL_7TQL_046

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

7TQL|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_046 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.2366

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7TQL|1|2|G|924
7TQL|1|2|G|925
7TQL|1|2|A|926
*
7TQL|1|2|U|1015
7TQL|1|2|U|1016
7TQL|1|2|U|1017
7TQL|1|2|U|1018

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

ribosomal protein uS15

Chain b

40S ribosomal protein S27