IL_7TQL_055

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_055 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1839

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7TQL|1|2|U|1101
7TQL|1|2|G|1102
7TQL|1|2|C|1103
*
7TQL|1|2|G|1129
7TQL|1|2|G|1130
7TQL|1|2|G|1131

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

ribosomal protein uS2

Chain N

ribosomal protein uS15

Chain S

ribosomal protein eS17

Chain b

40S ribosomal protein S27

Chain c

40S ribosomal protein S26