IL_7TQL_079

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_079 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0809

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7TQL|1|2|G|1604
7TQL|1|2|G|1605
7TQL|1|2|G|1606
7TQL|1|2|A|1607
7TQL|1|2|U|1608
7TQL|1|2|C|1609
7TQL|1|2|G|1610
*
7TQL|1|2|C|1629
7TQL|1|2|A|1630
7TQL|1|2|U|1631
7TQL|1|2|G|1632
7TQL|1|2|A|1633
7TQL|1|2|A|1634
7TQL|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

ribosomal protein uS13

Chain U

40S ribosomal protein S19