IL_7TQL_086

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

7TQL|1|2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_086 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2967

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7TQL|1|2|U|1720
7TQL|1|2|U|1721
7TQL|1|2|G|1722
7TQL|1|2|G|1723
*
7TQL|1|2|C|1811
7TQL|1|2|U|1812
7TQL|1|2|A|1813

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 5B

Chain X

40S ribosomal protein S23