IL_7TTU_034

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7TTU|1|1|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_034 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.154

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7TTU|1|1|U|1062
7TTU|1|1|U|1063
7TTU|1|1|A|1064
7TTU|1|1|A|1065
7TTU|1|1|G|1066
7TTU|1|1|U|1067
7TTU|1|1|G|1068
*
7TTU|1|1|C|1184
7TTU|1|1|U|1185
7TTU|1|1|A|1186
7TTU|1|1|A|1187
7TTU|1|1|A|1188

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36

Chain V

50S ribosomal protein L13