IL_7TTU_045

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_045 not in the Motif Atlas

Geometric match to IL_4WF9_052

Geometric discrepancy: 0.154

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7TTU|1|1|U|1394
7TTU|1|1|G|1395
7TTU|1|1|A|1396
7TTU|1|1|G|1397
7TTU|1|1|G|1398
*
7TTU|1|1|C|1407
7TTU|1|1|G|1408
7TTU|1|1|U|1409
7TTU|1|1|A|1410
7TTU|1|1|G|1411

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain J

50S ribosomal protein L28

Chain P

50S ribosomal protein L34