IL_7TTU_054

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7TTU|1|1|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_054 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1052

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TTU|1|1|C|1730
7TTU|1|1|G|1731
7TTU|1|1|U|1732
7TTU|1|1|A|1733
7TTU|1|1|A|1734
7TTU|1|1|C|1735
*
7TTU|1|1|G|1740
7TTU|1|1|G|1741
7TTU|1|1|A|1742
7TTU|1|1|G|1743
7TTU|1|1|A|1744
7TTU|1|1|A|1745
7TTU|1|1|G|1746

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2