IL_7TUT_003

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_003 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1014

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7TUT|1|K|G|16
7TUT|1|K|A|17
7TUT|1|K|C|18
*
7TUT|1|v|G|139
7TUT|1|v|C|140
7TUT|1|v|C|141

Current chains

Chain K

28S ribosomal RNA

Chain v

5.8S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein L15

Chain X

eL23

Chain h

eL35