IL_7TUT_031

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

7TUT|1|K|A|943, 7TUT|1|K|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_031 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.282

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7TUT|1|K|A|723
7TUT|1|K|C|724
*
7TUT|1|K|G|942
7TUT|1|K|A|943
7TUT|1|K|A|944
7TUT|1|K|U|945

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7