IL_7TUT_038

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7TUT|1|K|C|1214, 7TUT|1|K|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_038 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2776

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7TUT|1|K|C|1082
7TUT|1|K|U|1083
7TUT|1|K|C|1084
*
7TUT|1|K|G|1213
7TUT|1|K|C|1214
7TUT|1|K|C|1215
7TUT|1|K|C|1216
7TUT|1|K|G|1217

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain b

eL29