IL_7TUT_102

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7TUT|1|K|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_102 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0824

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7TUT|1|K|C|3700
7TUT|1|K|C|3701
7TUT|1|K|A|3702
7TUT|1|K|G|3703
*
7TUT|1|K|C|3749
7TUT|1|K|G|3750

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8