IL_7TUT_105

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7TUT|1|K|A|3711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_105 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3923

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7TUT|1|K|G|3710
7TUT|1|K|A|3711
7TUT|1|K|A|3712
7TUT|1|K|U|3713
7TUT|1|K|G|3714
*
7TUT|1|K|C|3739
7TUT|1|K|G|3740
7TUT|1|K|C|3741

Current chains

Chain K

28S ribosomal RNA

Nearby chains