IL_7TUT_110

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7TUT|1|K|A|3901, 7TUT|1|K|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_110 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1492

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TUT|1|K|G|3900
7TUT|1|K|A|3901
7TUT|1|K|A|3902
*
7TUT|1|K|U|4558
7TUT|1|K|A|4559
7TUT|1|K|C|4560
7TUT|1|K|C|4561

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain w

uL3