3D structure

PDB id
7TUT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
GUGAGGC*GCUC
Length
11 nucleotides
Bulged bases
7TUT|1|K|G|4084, 7TUT|1|K|C|4162, 7TUT|1|K|U|4163
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TUT_114 not in the Motif Atlas
Homologous match to IL_8C3A_106
Geometric discrepancy: 0.1972
The information below is about IL_8C3A_106
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74114.1
Basepair signature
cWW-cWS-cWW-L-R
Number of instances in this motif group
2

Unit IDs

7TUT|1|K|G|4082
7TUT|1|K|U|4083
7TUT|1|K|G|4084
7TUT|1|K|A|4085
7TUT|1|K|G|4086
7TUT|1|K|G|4087
7TUT|1|K|C|4088
*
7TUT|1|K|G|4161
7TUT|1|K|C|4162
7TUT|1|K|U|4163
7TUT|1|K|C|4164

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein L8
Chain G
60S ribosomal protein L7a
Chain X
eL23
Chain v
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2342 s