IL_7TUT_115

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GCGAGC*GGCUCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_115 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.2985

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7TUT|1|K|G|4095
7TUT|1|K|C|4096
7TUT|1|K|G|4097
7TUT|1|K|A|4098
7TUT|1|K|G|4099
7TUT|1|K|C|4100
*
7TUT|1|K|G|4108
7TUT|1|K|G|4109
7TUT|1|K|C|4110
7TUT|1|K|U|4111
7TUT|1|K|C|4112
7TUT|1|K|U|4113

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain g

60S ribosomal protein L34