IL_7TUT_171

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|C|4466
7TUT|1|K|A|4467
7TUT|1|K|U|4468
7TUT|1|K|U|4469
7TUT|1|K|G|4470
*
7TUT|1|K|C|4485
7TUT|1|K|C|4486
7TUT|1|K|A|4487
7TUT|1|K|A|4488
7TUT|1|K|G|4489
7TUT|1|K|C|4490
7TUT|1|K|G|4491

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13

Chain V

Ribosomal protein L23

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1

Chain w

uL3