IL_7U0H_004
3D structure
- PDB id
- 7U0H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 7U0H|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7U0H_004 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0734
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7U0H|1|1|C|31
7U0H|1|1|U|32
7U0H|1|1|G|33
7U0H|1|1|A|34
7U0H|1|1|A|35
7U0H|1|1|C|36
7U0H|1|1|U|37
7U0H|1|1|U|38
*
7U0H|1|1|A|45
7U0H|1|1|U|46
7U0H|1|1|C|47
7U0H|1|1|A|48
7U0H|1|1|A|49
7U0H|1|1|U|50
7U0H|1|1|A|51
7U0H|1|1|A|52
7U0H|1|1|G|53
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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