IL_7U0H_080

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7U0H|1|1|A|2808

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U0H_080 not in the Motif Atlas

Geometric match to IL_7RQB_069

Geometric discrepancy: 0.2827

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

7U0H|1|1|G|2412
7U0H|1|1|A|2413
*
7U0H|1|1|U|2807
7U0H|1|1|A|2808
7U0H|1|1|C|2809

Current chains

Chain 1

25S rRNA

Nearby chains

Chain r

Ribosome biogenesis protein NSA2