IL_7U0H_081

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AGUCC*GCU

Length

8 nucleotides

Bulged bases

7U0H|1|1|U|2771, 7U0H|1|1|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U0H_081 not in the Motif Atlas

Geometric match to IL_4M4O_004

Geometric discrepancy: 0.3673

The information below is about IL_4M4O_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7U0H|1|1|A|2769
7U0H|1|1|G|2770
7U0H|1|1|U|2771
7U0H|1|1|C|2772
7U0H|1|1|C|2773
*
7U0H|1|1|G|2787
7U0H|1|1|C|2788
7U0H|1|1|U|2789

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28