IL_7U2I_297

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

7U2I|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2I_297 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1023

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7U2I|1|2a|G|409
7U2I|1|2a|G|410
7U2I|1|2a|A|411
7U2I|1|2a|A|412
7U2I|1|2a|G|413
7U2I|1|2a|A|414
7U2I|1|2a|A|415
7U2I|1|2a|G|416
*
7U2I|1|2a|U|427
7U2I|1|2a|G|428
7U2I|1|2a|U|429
7U2I|1|2a|A|430
7U2I|1|2a|A|431
7U2I|1|2a|A|432
7U2I|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4