IL_7U2J_069

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

7U2J|1|1A|G|1801, 7U2J|1|1A|G|1816, 7U2J|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_069 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.0318

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7U2J|1|1A|U|1798
7U2J|1|1A|G|1799
7U2J|1|1A|C|1800
7U2J|1|1A|G|1801
7U2J|1|1A|A|1802
7U2J|1|1A|A|1803
7U2J|1|1A|C|1804
*
7U2J|1|1A|G|1813
7U2J|1|1A|G|1814
7U2J|1|1A|A|1815
7U2J|1|1A|G|1816
7U2J|1|1A|G|1817
7U2J|1|1A|U|1818
7U2J|1|1A|A|1819
7U2J|1|1A|U|1820
7U2J|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA