IL_7U2J_114
3D structure
- PDB id
- 7U2J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7U2J_114 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0313
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7U2J|1|1B|C|71
7U2J|1|1B|G|72
7U2J|1|1B|A|73
7U2J|1|1B|U|74
7U2J|1|1B|G|75
7U2J|1|1B|G|76
7U2J|1|1B|U|77
7U2J|1|1B|A|78
7U2J|1|1B|C|79
*
7U2J|1|1B|G|98
7U2J|1|1B|G|99
7U2J|1|1B|A|100
7U2J|1|1B|G|101
7U2J|1|1B|A|102
7U2J|1|1B|G|103
7U2J|1|1B|U|104
7U2J|1|1B|A|105
7U2J|1|1B|G|106
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
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