IL_7U2J_238

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7U2J|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_238 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1186

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7U2J|1|2A|C|1686
7U2J|1|2A|G|1687
7U2J|1|2A|U|1688
7U2J|1|2A|A|1689
7U2J|1|2A|A|1690
7U2J|1|2A|C|1691
*
7U2J|1|2A|G|1696
7U2J|1|2A|G|1697
7U2J|1|2A|A|1698
7U2J|1|2A|G|1699
7U2J|1|2A|A|1700
7U2J|1|2A|A|1701
7U2J|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA