IL_7UCJ_018
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_018 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0834
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7UCJ|1|5|G|415
7UCJ|1|5|U|416
7UCJ|1|5|G|417
7UCJ|1|5|A|418
7UCJ|1|5|A|419
7UCJ|1|5|A|420
7UCJ|1|5|C|421
*
7UCJ|1|8|G|13
7UCJ|1|8|OMU|14
7UCJ|1|8|G|15
7UCJ|1|8|G|16
7UCJ|1|8|A|17
7UCJ|1|8|U|18
7UCJ|1|8|C|19
Current chains
- Chain 5
- 28s rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain e
- 60S ribosomal protein L32
Coloring options: