IL_7UCJ_021

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7UCJ|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_021 not in the Motif Atlas

Homologous match to IL_8GLP_024

Geometric discrepancy: 0.5616

The information below is about IL_8GLP_024

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

7UCJ|1|5|C|459
7UCJ|1|5|C|460
*
7UCJ|1|5|G|695
7UCJ|1|5|C|696
7UCJ|1|5|G|697

Current chains

Chain 5

28s rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

60S ribosomal protein L28