IL_7UCJ_076

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

7UCJ|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_076 not in the Motif Atlas

Geometric match to IL_8CRE_390

Geometric discrepancy: 0.387

The information below is about IL_8CRE_390

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7UCJ|1|5|C|1920
7UCJ|1|5|C|1921
7UCJ|1|5|G|1922
*
7UCJ|1|5|C|2062
7UCJ|1|5|G|2063

Current chains

Chain 5

28s rRNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13a

Chain S

60S ribosomal protein L18a

Chain f

60S ribosomal protein L35a