3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAC*GAA
Length
8 nucleotides
Bulged bases
7UCJ|1|5|A|2428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UCJ_087 not in the Motif Atlas
Geometric match to IL_7A0S_047
Geometric discrepancy: 0.2301
The information below is about IL_7A0S_047
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_83150.2
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

7UCJ|1|5|U|2415
7UCJ|1|5|G|2416
7UCJ|1|5|A|2417
7UCJ|1|5|A|2418
7UCJ|1|5|C|2419
*
7UCJ|1|5|G|2427
7UCJ|1|5|A|2428
7UCJ|1|5|A|2429

Current chains

Chain 5
28s rRNA

Nearby chains

Chain P
60S ribosomal protein L17
Chain R
60S ribosomal protein L19
Chain l
60S ribosomal protein L39

Coloring options:


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