3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GG*CUC
Length
5 nucleotides
Bulged bases
7UCJ|1|5|U|2769
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UCJ_092 not in the Motif Atlas
Geometric match to IL_2A64_002
Geometric discrepancy: 0.2691
The information below is about IL_2A64_002
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7UCJ|1|5|G|2549
7UCJ|1|5|G|2550
*
7UCJ|1|5|C|2768
7UCJ|1|5|U|2769
7UCJ|1|5|C|2770

Current chains

Chain 5
28s rRNA

Nearby chains

Chain g
60S ribosomal protein L34

Coloring options:


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