IL_7UCJ_101

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_101 not in the Motif Atlas

Homologous match to IL_8C3A_081

Geometric discrepancy: 0.098

The information below is about IL_8C3A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

7UCJ|1|5|A|2844
7UCJ|1|5|A|2845
7UCJ|1|5|G|2846
*
7UCJ|1|5|C|3842
7UCJ|1|5|C|3843
7UCJ|1|5|U|3844

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23

Chain W

Ribosomal protein L24