IL_7UCJ_114

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_114 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1109

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

7UCJ|1|5|G|3780
7UCJ|1|5|C|3781
*
7UCJ|1|5|G|3811
7UCJ|1|5|C|3812
7UCJ|1|5|A|3813
7UCJ|1|5|U|3814

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain n

eL41