IL_7UCJ_122

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7UCJ|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_122 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1051

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7UCJ|1|5|U|3927
7UCJ|1|5|A|3928
7UCJ|1|5|G|3929
*
7UCJ|1|5|U|4181
7UCJ|1|5|G|4182
7UCJ|1|5|G|4183
7UCJ|1|5|G|4184

Current chains

Chain 5

28s rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain N

60S ribosomal protein L15

Chain o

60S ribosomal protein L36a