IL_7UCJ_128

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7UCJ|1|5|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_128 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1704

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7UCJ|1|5|G|4291
7UCJ|1|5|A|4292
7UCJ|1|5|PSU|4293
7UCJ|1|5|C|4294
*
7UCJ|1|5|G|4316
7UCJ|1|5|A|4317
7UCJ|1|5|C|4318

Current chains

Chain 5

28s rRNA

Nearby chains

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a