IL_7UCJ_201

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

7UCJ|1|9|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_201 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2692

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7UCJ|1|9|A|529
7UCJ|1|9|U|530
*
7UCJ|1|9|A|554
7UCJ|1|9|A|555
7UCJ|1|9|U|556

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Ee

40S ribosomal protein S30

Chain JJ

40S ribosomal protein S9