IL_7UCJ_211

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_211 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2586

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7UCJ|1|9|G|692
7UCJ|1|9|A|693
7UCJ|1|9|G|694
7UCJ|1|9|C|695
*
7UCJ|1|9|G|731
7UCJ|1|9|U|732
7UCJ|1|9|C|733
7UCJ|1|9|C|734

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S7

Chain WW

40S ribosomal protein S15a