IL_7UCJ_232

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7UCJ|1|9|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_232 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.075

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7UCJ|1|9|G|1203
7UCJ|1|9|A|1204
*
7UCJ|1|9|U|1694
7UCJ|1|9|A|1695
7UCJ|1|9|C|1696

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

eS26

Chain CC

40S ribosomal protein S2