IL_7UCJ_253

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_253 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.089

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7UCJ|1|9|G|1604
7UCJ|1|9|G|1605
7UCJ|1|9|G|1606
7UCJ|1|9|A|1607
7UCJ|1|9|U|1608
7UCJ|1|9|C|1609
7UCJ|1|9|G|1610
*
7UCJ|1|9|C|1629
7UCJ|1|9|A|1630
7UCJ|1|9|U|1631
7UCJ|1|9|G|1632
7UCJ|1|9|A|1633
7UCJ|1|9|A|1634
7UCJ|1|9|C|1635

Current chains

Chain 9

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain TT

40S ribosomal protein S19