IL_7UCJ_255

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(OMC)CC*G(UR3)A(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_255 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.1109

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7UCJ|1|9|G|1702
7UCJ|1|9|OMC|1703
7UCJ|1|9|C|1704
7UCJ|1|9|C|1705
*
7UCJ|1|9|G|1829
7UCJ|1|9|UR3|1830
7UCJ|1|9|A|1831
7UCJ|1|9|6MZ|1832
7UCJ|1|9|C|1833

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

mRNA

Chain 2

Transfer RNA; tRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n

eL41