IL_7UCJ_296

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_296 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.1185

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7UCJ|1|9|A|802
7UCJ|1|9|C|803
*
7UCJ|1|9|G|860
7UCJ|1|9|A|861
7UCJ|1|9|A|862
7UCJ|1|9|U|863

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S7

Chain LL

40S ribosomal protein S11

Chain WW

40S ribosomal protein S15a

Chain XX

40S ribosomal protein S23