IL_7UCJ_301

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(4AC)G*CAG

Length

5 nucleotides

Bulged bases

7UCJ|1|9|A|1489

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_301 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1759

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

7UCJ|1|9|4AC|1337
7UCJ|1|9|G|1338
*
7UCJ|1|9|C|1488
7UCJ|1|9|A|1489
7UCJ|1|9|G|1490

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain DD

40S ribosomal protein S3

Chain Dd

40S ribosomal protein S29

Chain QQ

40S ribosomal protein S16

Chain UU

40S ribosomal protein S20