IL_7UCK_002

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

7UCK|1|5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1387

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7UCK|1|5|A|12
7UCK|1|5|U|13
7UCK|1|5|C|14
*
7UCK|1|8|G|143
7UCK|1|8|U|144

Current chains

Chain 5

28s rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

60S ribosomal protein L15

Chain X

60S ribosomal protein L23a