IL_7UCK_017
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 7UCK|1|5|G|409, 7UCK|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCK_017 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1383
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7UCK|1|5|G|387
7UCK|1|5|A|388
7UCK|1|5|A|389
7UCK|1|5|C|390
*
7UCK|1|5|G|401
7UCK|1|5|A|402
7UCK|1|5|G|403
7UCK|1|5|U|404
7UCK|1|5|U|405
7UCK|1|5|C|406
7UCK|1|5|A|407
7UCK|1|5|A|408
7UCK|1|5|G|409
7UCK|1|5|A|410
7UCK|1|5|G|411
7UCK|1|5|G|412
7UCK|1|5|G|413
7UCK|1|5|C|414
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L17
- Chain Y
- 60S ribosomal protein L26
- Chain l
- 60S ribosomal protein L39
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