IL_7UCK_068

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_068 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.3233

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7UCK|1|5|G|1753
7UCK|1|5|U|1754
7UCK|1|5|C|1755
7UCK|1|5|U|1756
*
7UCK|1|5|A|1776
7UCK|1|5|C|1777

Current chains

Chain 5

28s rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein